I must agree BINS doesn't scale brilliantly, I only have a bit over 1000 images in it and it does take a little while to regenerate the images. Fortunatly it doesn't rescale/reorientate the images more than once so if you run it often enough it's not too bad.
I do think it could be made smarter, like skipping whole directories if they havn't changed but as it is it doesn't maintain enough metadata. I might patch it if it gets on my nerves... If I'm moving directories around I tend to move them in the output directory too to avoid the rescaling.
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