GAMGI, the
General Atomistic Modelling Graphic Interface, is a tool for
visualizing atomic structures.
The project is supported by the Instituto Superior Técnico in
Lisbon, Portugal, and is being developed by José Carlos Pereira
and
others.
The software has been released under the GPL, BSD, and GFDL
licenses.
The project's
scientific goals state:
GAMGI aims to be useful for: 1) the scientific community working in Atomistic Modelling, that needs a graphic interface to build input data and to view and analyse output data, calculated with Ab-Initio and Molecular Mechanics programs; 2) the scientific community at large, studying Chemistry, Physics, Materials Science, Geology, etc., that needs a graphic interface to view and analyse atomic structural information and to prepare images for presentations in classes and seminars; 3) teaching chemistry and physics in secondary schools and universities, even inviting students to install and run GAMGI at home; 4) science promotion, in schools, exhibitions and science museums.
GAMGI can plot the following list of objects:
"Text, Orbital, Bond, Atom, Direction, Plane, Group, Molecule, Cluster, Cell, Arrow, Shape, Graph, Assembly, Light, Layer and Window."
The GAMGI
screen shots give a view of the user interface as well as a wide
variety of chemical plots performed by GAMGI.
The
technical mission discusses the GAMGI design philosophy and covers some
of the system requirements and dependencies:
"A really useful package must be easy to obtain, to compile, to use and to change, giving users and developers as much control as possible."
Version 0.11.2 of GAMGI was released this week, changes include:
"Crystallographic planes can now be represented by polygons, for all volumes, with minor restrictions. The Cell orientation in a Spherical volume is now the same as for Conventional, Primitive, Wigner-Seitz cell volumes."
The
change log file has more details and previews some upcoming features.
The GAMGI source code and packages for Debian and SUSE are available
here.
Comments (1 posted)
System Applications
Libraries
Version 0.7.1 of libannodex, a library which provides an interface for
reading and writing Annodex media, is available.
Changes include a new anx_importer_find() API call and more.
Full Story (comments: none)
Version 0.7.0 of libfishsound, a library with utilities for
decoding and encoding the Vorbis and Speex audio formats, is out.
Changes include several backported features from the development trunk.
Full Story (comments: none)
Web Site Development
Version 2.0 of FCKeditor, an online DHTML text editor,
has been announced.
"
It's XHTML compliant and
works with Firefox, Mozilla, Netscape and IE. After a long and delicate
development path, this is the final release of version 2.0. Now the editor is
even more stable. Lots of key bugs have been fixed and a few and exiting new
features has been added like native Flash support."
Comments (none posted)
Version 1.1b of Five, a Zope 2 product that allows you to integrate
Zope 3 technologies into Zope 2,
has been announced.
Changes include Zope 3-style i18n, Zope 3 to Zope 2 interface bridging,
and more standard ZCML directives.
Comments (none posted)
Version 1.4.7 of MediaWiki, the collaborative editing software that runs the Wikipedia online encyclopedia,
is available with bug fixes.
Comments (none posted)
Version 1.7 rc 2 of Midgard, a web content management system, is out
with several new features.
Full Story (comments: none)
Version 1.0.1 of Wicket
is out with bug fixes and other improvements.
"
Wicket is a
Java web application framework that takes simplicity, separation of concerns
and ease of development to a whole new level. Wicket pages can be mocked up,
previewed and later revised using standard WYSIWYG HTML design tools. Dynamic
content processing and form handling is all handled in Java code using a
first-class component model backed by POJO data beans that can easily be
persisted using your favourite technology."
Comments (none posted)
Desktop Applications
Audio Applications
Version 0.94.0 of gtkpod, a graphical front-end for the iPod that
uses GTK2,
is available.
"
New features include the stable sorting of displayed tracks (click several headers in order and have the view sorted accordingly) and the sort-ignore-lists (ignore the 'the' at the start of albums...). If you speak Hebrew, you will probably welcome the new Hebrew translation catalog.
More important for some users may be the support for iTunes 4.9 and firmware 3.1 released by Apple at the end of last month. Podcasts are still not supported, however."
Comments (none posted)
Version 2.0 of iPodder
has been announced.
"
iPodder is a media aggregator which automatically downloads files to your
computer or portable device, leaving you 'one-click-away' from latest media
feeds. Based on the iPodder idea of Adam Curry. Thanks to much effort by
Scott Grayban, the iPodder "Lemon Edition" team is pleased to announce the
release of iPodder 2.0 for Linux."
See the
release notes for change information.
Comments (none posted)
Version 0.2.18 of QjackCtl, a GUI control interface to the Jack Audio
Connection Kit (JACK) is out with bug fixes.
Full Story (comments: none)
CAD
Version 7.4.0 of BRL-CAD, a constructive geometry solid modeling system,
has been announced.
"
This release of BRL-CAD includes, among many new and improved features, the following enhancements since the last announcement (7.4.0 and 7.2.6 enhancements): the addition of an impressive high-performance triangle path-tracer, a completely rewritten rtarea tool for computing exposed and presented surface areas, benchmark suite enhancements, installation of a benchmark tool, and the inclusion of example geometry in the installation."
Comments (1 posted)
Data Visualization
Version 0.8 of the Python graphics package
PyX is available.
"
PyX now supports PDF output and also the generation of multi-page PS/PDF documents. The internals of the path system have been cleaned up and the external interface has been streamlined. The axis data handling of the graph component has undergone a major revision. Many other improvements and bug fixes are included in this release."
Comments (none posted)
Desktop Environments
Development Release 2.11.5 of the GNOME desktop is
available for testing.
"
This is the first actual 2.11 release, (and it's late. The release team
apologizes), though garnome and ubuntu breezy (without GTK+ 2.7) have been
shipping previous versions. So it's even more important now that people
test this as much as possible."
Full Story (comments: none)
The following new GNOME software has been announced this week:
Comments (none posted)
The following new KDE software has been announced this week:
Comments (none posted)
KDE.News
has announced
the July 2005 edition of
This Month in SVN.
"
New features include recursive functions in KTurtle,
asthetic enhancements in Kalzium, the eye-candy that is SuperKaramba and
Konqueror's improved search box."
Comments (none posted)
Desktop Publishing
Version 1.3.6 of LyX, a GUI front-end for the TeX typesetting application,
is out with bug fixes and newly added native support for Windows.
Full Story (comments: none)
Scribus 1.3.0 has been released. This version is called a "technology
preview," but is said to be "stable and usable." Enhancements include a
new undo system, table-of-contents generation, a "pre-flight verifier" for
printing and PDF exports, facing page support, ports to your favorite
proprietary platform, and more; click below for the full announcement.
Full Story (comments: none)
Electronics
Version 0.5.0 of
Signs is available.
"
Signs is a logic synthesis tool and gate level simulator for circuit descriptions in VHDL and other hardware description languages. Besides that, Signs contains modern fault simulators and automatic test pattern generators for computer aided testing of integrated circuits."
Comments (none posted)
Version 3.3.25 of
XCircuit,
an electronic schematic drawing package, is out. This release adds
patches from the SourceForge repository.
Comments (none posted)
Financial Applications
Version 2.4.14 of
SQL_Ledger,
a web-based accounting system is out.
Changes include new keyboard access keys for POS, new focus capabilities,
bug fixes, and more.
Comments (none posted)
Games
Version 3.0.10 of the game Auctioneer
has been announced, it features bug fixes and performance improvements.
"
Auctioneer is an interface addon to the World of Warcraft (TM) game.
Auctioneer enhances the WoW interface by adding additional information to the
tooltips in the game that allow you to see additional information on the
value of items in the game."
Comments (none posted)
Version 0.9 of Pioneers
is available.
"
Pioneers is a clone of the board game The Settlers of Catan.
The new version includes a map editor, a stronger computer player and new maps."
Comments (none posted)
The
PyGame (Python Game)
project has re-emerged. There are several new games available, a
PyWeek Game Programming Challenge, and more.
Comments (none posted)
Mail Clients
Version 1.0.5 of the Mozilla Thunderbird email client
has been announced.
"
This latest release
is a minor update to the standalone mail and news program that fixes some
security issues and improves stability. It is recommended for all 1.0.x users
as an essential upgrade and can be downloaded from the Thunderbird product
page or the 1.0.5 directory on ftp.mozilla.org."
Comments (none posted)
Version 1.0.6 of the Mozilla Thunderbird email client
has been announced.
"
This latest version should resolve the
extension problems that were accidentally introduced in Thunderbird 1.0.5. In
particular, the popular Enigmail PGP add-on should now work correctly."
Comments (none posted)
The Alpha 2 release of Mozilla Thunderbird, an email client,
is available for testing.
"
Alpha 2 contains many bug fixes and improvements to the new features which
were introduced in the first alpha including the ability to create message
filter actions for forwarding and replying (with a template), exporting RSS
feeds, handling .eml files, and a new software update system (currently
disabled)."
Comments (none posted)
Music Applications
Version 0.61b of E-Radium, a midi music editor that runs under the
E-Uae Amiga emulator, is out.
"
This version of E-Uae is a hacked version of 0.28cvs, which runs
with realtime priority to get accurate timing and supports alsa-seq
to access midi. It does not hog the cpu as much as e-uae does
either so it can be used together with various sound synthesis
software running simultaniously in linux."
Full Story (comments: none)
Version 2.8.0 Final of NoteEdit, a music score editor, is available.
"
The NoteEdit team is glad to announce the first major-version
since its new beginning!" A long list of changes is included.
Full Story (comments: none)
Office Suites
The first release candidate of OpenOffice.org 1.1.5 is available
for testing.
"
What's important about 1.1.5rc? It includes numerous bug fixes but
just as important includes a filter for OpenDocument files, which is
the type that OpenOffice.org 2.0 and the 1.9.x releases create."
Full Story (comments: none)
Build 1.9.116 of OpenOffice.org has been released.
Numerous changes are included, click below for the details.
Full Story (comments: none)
Web Browsers
MozillaZine
has announced the availability of Firefox 1.0.6 candidate builds.
"
Marcia Knous writes: "The Mozilla Quality Assurance team is requesting help
from the community to test the 1.0.6 builds. Please visit the post in the QA
blog to get more information regarding the testing.""
Comments (none posted)
MozillaZine has
an announcement for the release of Mozilla Firefox 1.0.6.
"
As we reported previously, API
changes in last week's Firefox 1.0.5 broke some extensions. This version
should resolve the problems."
Comments (none posted)
MozillaZine
has announced the availability of Mozilla 1.7.9 release
candidates.
"
Mozilla 1.7.9 is a minor update to the Mozilla Application Suite
with fixes for some security issues."
Comments (none posted)
The minutes from the July 11, 2005 Mozilla.org staff meeting
have been announced.
"
Issues discussed include Mozilla Firefox 1.0.5, Deer Park
Alpha 2, the new application update system, 1.1 Beta 1 planning, server
transitions, international domain names (IDN), hiring new employees and the
news server."
Comments (none posted)
Languages and Tools
C
Stage 2 of the Gnu Compiler Collection version 4.1
has been closed.
"
The following projects were contributed during stage 1 and stage 2: New C Parser, LibAda GNATTools Branch, Code Sinking, Improved phi-opt, Structure Aliasing, Autovectorization Enhancements, Hot and Cold Partitioning, SMS Improvements, Integrated Immediate Uses, Tree Optimizer Cleanups, Variable-argument Optimization, Redesigned VEC API, IPA Infrastructure, Altivec Rewrite Warning Message Control, New SSA Operand Cache Implementation, Safe Builtins, Reimplementation of IBM Pro Police Stack Detector, New DECL hierarchy."
Comments (none posted)
Caml
The July 19, 2005 edition of the Caml Weekly News is online
with new Caml language articles. Topics include:
pftdbns 0.2.6, AS/Xcaml status, Pattern Matching Papers, OMake 0.9.6
and Idea for another type safe PostgreSQL interface.
Full Story (comments: none)
Java
Developer snapshot version 0.17 of GNU Classpath,
a set of free essential libraries for java, is out.
"
This is mainly a bug fix release for issues found with eclipse 3.1 and
Free Swing applications just after our 0.16 release. But it also
includes some exciting new features."
Full Story (comments: none)
Amir Shevat
looks at JUnit in an O'Reilly article.
"
There are many tools designed to help up test, analyze, and debug programs. One of the most well-known tools is JUnit, a framework that helps software and QA engineers test units of code. Almost everyone that encounters JUnit has a strong feeling about it: either they like it or they don't. One of the main complaints about JUnit is that it lacks the ability to test complex scenarios."
Comments (none posted)
Perl
The July 14, 2005 edition of
This Week in Perl 6 is out with the latest Perl 6 language news.
Comments (none posted)
PHP
Version 5.1 Beta 3 of
PHP
has been announced.
New features include the addition of PHP Data Objects,
better language performance, version 5.0 of the PCRE extension,
bug fixes, and more.
Comments (none posted)
The
PHP Weekly Summary for July 11, 2005 is out. Topics include:
Reference counting bug in libxml2; namespace proposal; date/timezone classes; signal blocking proposal; gone to Siberia; column length in PDO_MYSQL; a mad week in CVS; and safemode permissions patch.
Comments (none posted)
The
PHP Weekly Summary for July 18, 2005 is out. Topics include:
Date/timezone classes (continued); PHP 4.4.0 released; PHP 4.0 escaped; struct ordering?; PHP-GTK 1.0.2 released; politics and the BC break in PHP 4.4; PHP 5.1.0 beta 3 released; dropping support for Win 98/NT/ME?; Ilia's week; and another safemode patch.
Comments (none posted)
Python
The July 13, 2005 edition of Dr. Dobb's Python-URL!
is online with lots of new articles about the Python language.
Full Story (comments: none)
The July 20, 2005 edition of Dr. Dobb's Python-URL! is online
with the latest Python language articles.
Full Story (comments: none)
XML
Version 1.69.0 of DocBook XSL
has been released.
"
The release includes major feature changes, particularly in the manpages stylesheets, as well as a large number of bug fixes. This project is the home for the DocBook XSLT stylesheets and DSSSL stylesheets and more."
Comments (none posted)
Version Control
Version 0.21 of monotone, a version control system, is available.
Changes include several new command line options, new capabilities
and bug fixes.
Full Story (comments: none)
Miscellaneous
The Mark 8 release of the Algol 68 Genie interpreter
is available.
Changes include new networking procedures, a number of new keywords,
and more.
Comments (none posted)
Page editor: Forrest Cook
Next page: Linux in the news>>